Variant report

Variant	rs11824329
Chromosome Location	chr11:120677384-120677385
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11600866	1.00[EUR][1000 genomes]
rs11601137	1.00[EUR][1000 genomes]
rs11601226	1.00[EUR][1000 genomes]
rs11602311	1.00[EUR][1000 genomes]
rs11602668	1.00[EUR][1000 genomes]
rs11602752	1.00[EUR][1000 genomes]
rs11602871	1.00[EUR][1000 genomes]
rs11603412	1.00[EUR][1000 genomes]
rs11603439	1.00[EUR][1000 genomes]
rs11603526	1.00[EUR][1000 genomes]
rs11604517	1.00[EUR][1000 genomes]
rs11606811	1.00[EUR][1000 genomes]
rs11607770	1.00[EUR][1000 genomes]
rs57657899	1.00[EUR][1000 genomes]
rs60319624	1.00[EUR][1000 genomes]
rs73584429	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120671400-120687400	Weak transcription	Brain Substantia Nigra	brain
2	chr11:120673400-120677600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:120673600-120678000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:120673600-120687800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:120673600-120687800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:120674000-120696000	Weak transcription	Fetal Lung	lung
7	chr11:120675200-120678600	Weak transcription	Liver	Liver
8	chr11:120675400-120677600	Weak transcription	HepG2	liver
9	chr11:120676000-120680200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:120676400-120678400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr11:120676400-120680200	Enhancers	Placenta	Placenta
12	chr11:120676600-120677400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:120676600-120678400	Enhancers	HSMMtube	muscle
14	chr11:120676600-120680000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:120676800-120677800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:120676800-120678000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:120677000-120678000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:120677000-120678200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:120677000-120678200	Weak transcription	HSMM	muscle
20	chr11:120677200-120677400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:120677200-120677400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:120677200-120678000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:120677200-120678200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:120677200-120678600	Enhancers	H1 Cell Line	embryonic stem cell
25	chr11:120677200-120678800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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