Variant report

Variant	rs73584429
Chromosome Location	chr11:120751209-120751210
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11600068	0.88[AMR][1000 genomes]
rs11600866	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11601137	1.00[EUR][1000 genomes]
rs11601226	1.00[EUR][1000 genomes]
rs11602311	1.00[EUR][1000 genomes]
rs11602668	1.00[EUR][1000 genomes]
rs11602752	1.00[EUR][1000 genomes]
rs11602871	1.00[EUR][1000 genomes]
rs11603412	1.00[EUR][1000 genomes]
rs11603439	1.00[EUR][1000 genomes]
rs11603526	1.00[EUR][1000 genomes]
rs11604517	1.00[EUR][1000 genomes]
rs11606811	1.00[EUR][1000 genomes]
rs11607770	1.00[EUR][1000 genomes]
rs11824329	1.00[EUR][1000 genomes]
rs57657899	1.00[EUR][1000 genomes]
rs60319624	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120738600-120755600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:120739200-120755600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:120740200-120752400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:120740400-120752600	Weak transcription	Fetal Brain Male	brain
5	chr11:120745000-120752400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:120745000-120754200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:120746200-120754600	Weak transcription	Spleen	Spleen
8	chr11:120747200-120752200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:120747200-120752600	Weak transcription	Brain Angular Gyrus	brain
10	chr11:120747200-120753600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr11:120747200-120753800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:120747200-120754000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr11:120747200-120754400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr11:120747200-120754600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:120747400-120799400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:120747600-120753800	Weak transcription	Brain Hippocampus Middle	brain
17	chr11:120748400-120756600	Weak transcription	Fetal Lung	lung
18	chr11:120750400-120751800	Enhancers	Brain Anterior Caudate	brain
19	chr11:120750800-120753000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr11:120750800-120754000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:120751000-120751600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:120751000-120751800	Enhancers	Adipose Nuclei	Adipose
23	chr11:120751000-120752200	Enhancers	Aorta	Aorta
24	chr11:120751200-120751400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:120751200-120751400	Enhancers	Left Ventricle	heart
26	chr11:120751200-120751400	Enhancers	Right Atrium	heart
27	chr11:120751200-120751800	Enhancers	Ovary	ovary
28	chr11:120751200-120752000	Enhancers	Osteobl	bone
29	chr11:120751200-120752400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:120751200-120752400	Enhancers	Fetal Muscle Leg	muscle
31	chr11:120751200-120753600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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