Variant report

Variant	rs11606697
Chromosome Location	chr11:45119847-45119848
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45111489..45113728-chr11:45118009..45120988,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11604720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34937552	1.00[ASN][1000 genomes]
rs56989510	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6485590	0.91[ASN][1000 genomes]
rs73464505	0.83[EUR][1000 genomes]
rs73464507	1.00[ASN][1000 genomes]
rs747614	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7935386	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45113800-45123800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr11:45114800-45121800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:45114800-45124200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:45115600-45122000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr11:45116000-45121800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr11:45116200-45120600	Enhancers	Fetal Brain Male	brain
7	chr11:45117000-45124000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:45117000-45124000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:45117000-45126400	Weak transcription	Thymus	Thymus
10	chr11:45117400-45122000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr11:45117800-45120000	Enhancers	Fetal Brain Female	brain
12	chr11:45118000-45120400	Enhancers	NHEK	skin
13	chr11:45118200-45120400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:45118200-45120400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:45118400-45120400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr11:45118400-45121800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:45118600-45120200	Enhancers	HMEC	breast
18	chr11:45119200-45120000	Enhancers	Aorta	Aorta
19	chr11:45119200-45120000	Enhancers	Esophagus	oesophagus
20	chr11:45119200-45120000	Enhancers	Left Ventricle	heart
21	chr11:45119200-45120000	Enhancers	Lung	lung
22	chr11:45119200-45120000	Enhancers	Right Atrium	heart
23	chr11:45119200-45120000	Enhancers	Spleen	Spleen
24	chr11:45119400-45120000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr11:45119400-45122000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:45119600-45120200	Enhancers	Right Ventricle	heart
27	chr11:45119800-45120000	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr11:45119800-45120000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:45119800-45120000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:45119800-45120000	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
31	chr11:45119800-45120000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
32	chr11:45119800-45124200	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links