Variant report

Variant	rs6485590
Chromosome Location	chr11:45118565-45118566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45111489..45113728-chr11:45118009..45120988,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11038296	1.00[CHD][hapmap]
rs11604720	0.91[ASN][1000 genomes]
rs11606697	0.91[ASN][1000 genomes]
rs12363092	1.00[JPT][hapmap]
rs16938170	1.00[JPT][hapmap]
rs1872887	0.94[MEX][hapmap]
rs34937552	1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs56989510	0.86[ASN][1000 genomes]
rs73464507	0.91[ASN][1000 genomes]
rs747614	1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7924809	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7935386	0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6485590	AMIGO1	trans	parietal	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45111800-45119200	Weak transcription	Aorta	Aorta
2	chr11:45113800-45123800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr11:45114000-45119200	Weak transcription	Left Ventricle	heart
4	chr11:45114000-45119200	Weak transcription	Pancreas	Pancrea
5	chr11:45114400-45119200	Weak transcription	Right Atrium	heart
6	chr11:45114600-45119400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:45114800-45119200	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:45114800-45121800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr11:45114800-45124200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:45115200-45119200	Weak transcription	Lung	lung
11	chr11:45115200-45119600	Weak transcription	Right Ventricle	heart
12	chr11:45115400-45119000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:45115400-45119200	Weak transcription	Esophagus	oesophagus
14	chr11:45115600-45118600	Weak transcription	HMEC	breast
15	chr11:45115600-45122000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr11:45116000-45121800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr11:45116200-45120600	Enhancers	Fetal Brain Male	brain
18	chr11:45116600-45119200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr11:45117000-45124000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:45117000-45124000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:45117000-45126400	Weak transcription	Thymus	Thymus
22	chr11:45117200-45119200	Weak transcription	Spleen	Spleen
23	chr11:45117400-45122000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:45117800-45119400	Weak transcription	Brain Germinal Matrix	brain
25	chr11:45117800-45120000	Enhancers	Fetal Brain Female	brain
26	chr11:45118000-45120400	Enhancers	NHEK	skin
27	chr11:45118200-45120400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:45118200-45120400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:45118400-45118600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:45118400-45118600	Enhancers	Brain Anterior Caudate	brain
31	chr11:45118400-45118600	Enhancers	Psoas Muscle	Psoas
32	chr11:45118400-45120400	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr11:45118400-45121800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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