Variant report

Variant	rs11038296
Chromosome Location	chr11:45117171-45117172
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1075293	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10838430	0.82[GIH][hapmap]
rs11038297	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs11038318	0.91[GIH][hapmap]
rs11604741	1.00[ASN][1000 genomes]
rs11605819	1.00[ASN][1000 genomes]
rs1487719	0.91[GIH][hapmap]
rs2077427	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2863156	0.91[GIH][hapmap]
rs2863161	0.91[GIH][hapmap]
rs34937552	1.00[CHD][hapmap]
rs4994000	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61074942	0.84[EUR][1000 genomes]
rs6485590	1.00[CHD][hapmap]
rs7116385	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7122974	0.92[GIH][hapmap]
rs747614	1.00[CHD][hapmap]
rs7480089	0.91[GIH][hapmap]
rs756012	0.90[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11038296	OR4X2	cis	parietal	SCAN

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45107400-45117400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:45107600-45117200	Enhancers	Spleen	Spleen
3	chr11:45111800-45119200	Weak transcription	Aorta	Aorta
4	chr11:45112400-45117600	Enhancers	Primary hematopoietic stem cells	blood
5	chr11:45113200-45117200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr11:45113200-45117200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:45113200-45117600	Enhancers	Fetal Thymus	thymus
8	chr11:45113800-45123800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:45114000-45118000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:45114000-45119200	Weak transcription	Left Ventricle	heart
11	chr11:45114000-45119200	Weak transcription	Pancreas	Pancrea
12	chr11:45114400-45117200	Enhancers	Dnd41	blood
13	chr11:45114400-45119200	Weak transcription	Right Atrium	heart
14	chr11:45114600-45119400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:45114800-45119200	Weak transcription	Brain Hippocampus Middle	brain
16	chr11:45114800-45121800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:45114800-45124200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr11:45115200-45117200	Enhancers	Brain Anterior Caudate	brain
19	chr11:45115200-45119200	Weak transcription	Lung	lung
20	chr11:45115200-45119600	Weak transcription	Right Ventricle	heart
21	chr11:45115400-45119000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:45115400-45119200	Weak transcription	Esophagus	oesophagus
23	chr11:45115600-45117400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:45115600-45118600	Weak transcription	HMEC	breast
25	chr11:45115600-45122000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr11:45115800-45117400	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr11:45115800-45117800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:45116000-45121800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr11:45116200-45117400	Enhancers	Fetal Brain Female	brain
30	chr11:45116200-45120600	Enhancers	Fetal Brain Male	brain
31	chr11:45116400-45117200	Enhancers	Brain Substantia Nigra	brain
32	chr11:45116400-45117800	Enhancers	Brain Germinal Matrix	brain
33	chr11:45116600-45117200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:45116600-45117200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:45116600-45117400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:45116600-45118200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:45116600-45119200	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr11:45117000-45118000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr11:45117000-45118000	Weak transcription	NHEK	skin
40	chr11:45117000-45124000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr11:45117000-45124000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr11:45117000-45126400	Weak transcription	Thymus	Thymus

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