Variant report
| Variant | rs11038318 |
|---|---|
| Chromosome Location | chr11:45153599-45153600 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000019485 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs1075293 | 0.80[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap] |
| rs10769117 | 0.90[EUR][1000 genomes] |
| rs11038296 | 0.91[GIH][hapmap] |
| rs11038297 | 0.85[CEU][hapmap] |
| rs11038301 | 1.00[CEU][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12295480 | 1.00[CEU][hapmap];0.86[YRI][hapmap];0.91[EUR][1000 genomes] |
| rs12363092 | 1.00[CHB][hapmap] |
| rs1487719 | 1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs16938170 | 1.00[CHB][hapmap] |
| rs2077427 | 0.80[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap] |
| rs2863156 | 1.00[CHB][hapmap];1.00[GIH][hapmap] |
| rs2863161 | 1.00[CHB][hapmap];0.81[GIH][hapmap] |
| rs4994000 | 0.88[CEU][hapmap] |
| rs7109943 | 0.82[EUR][1000 genomes] |
| rs7122974 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.84[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7480089 | 0.81[GIH][hapmap] |
| rs756012 | 0.80[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv825852 | chr11:45141386-45228580 | Bivalent/Poised TSS Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11038318 | OR4X2 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
