Variant report

Variant	rs2077427
Chromosome Location	chr11:45117657-45117658
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1075293	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10838430	0.82[GIH][hapmap]
rs11038296	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11038297	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11038318	0.80[CEU][hapmap];0.91[GIH][hapmap];0.85[TSI][hapmap]
rs12295480	0.80[CEU][hapmap]
rs1487719	0.91[GIH][hapmap];0.85[TSI][hapmap]
rs2863156	0.91[GIH][hapmap]
rs2863161	0.91[GIH][hapmap]
rs4994000	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61074942	0.97[EUR][1000 genomes]
rs7122974	0.80[CEU][hapmap];0.92[GIH][hapmap];0.85[TSI][hapmap]
rs7480089	0.91[GIH][hapmap]
rs756012	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2077427	OR4X2	cis	parietal	SCAN

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45111800-45119200	Weak transcription	Aorta	Aorta
2	chr11:45113800-45123800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr11:45114000-45118000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:45114000-45119200	Weak transcription	Left Ventricle	heart
5	chr11:45114000-45119200	Weak transcription	Pancreas	Pancrea
6	chr11:45114400-45119200	Weak transcription	Right Atrium	heart
7	chr11:45114600-45119400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:45114800-45119200	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:45114800-45121800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:45114800-45124200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr11:45115200-45119200	Weak transcription	Lung	lung
12	chr11:45115200-45119600	Weak transcription	Right Ventricle	heart
13	chr11:45115400-45119000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:45115400-45119200	Weak transcription	Esophagus	oesophagus
15	chr11:45115600-45118600	Weak transcription	HMEC	breast
16	chr11:45115600-45122000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr11:45115800-45117800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:45116000-45121800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr11:45116200-45120600	Enhancers	Fetal Brain Male	brain
20	chr11:45116400-45117800	Enhancers	Brain Germinal Matrix	brain
21	chr11:45116600-45118200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:45116600-45119200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr11:45117000-45118000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:45117000-45118000	Weak transcription	NHEK	skin
25	chr11:45117000-45124000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:45117000-45124000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:45117000-45126400	Weak transcription	Thymus	Thymus
28	chr11:45117200-45118000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:45117200-45118200	Weak transcription	Brain Anterior Caudate	brain
30	chr11:45117200-45119200	Weak transcription	Spleen	Spleen
31	chr11:45117400-45117800	Weak transcription	Fetal Brain Female	brain
32	chr11:45117400-45118400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr11:45117400-45122000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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