Variant report

Variant	rs16938170
Chromosome Location	chr11:45123182-45123183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:44999566..45001373-chr11:45120820..45123458,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11038318	1.00[CHB][hapmap]
rs12363092	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2863156	1.00[CHB][hapmap]
rs2863161	1.00[CHB][hapmap]
rs34937552	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6485590	1.00[JPT][hapmap]
rs747614	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3324976	chr11:45123104-45123879	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3488010	chr11:45123138-45123916	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3488011	chr11:45123138-45123916	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1954118	chr11:45123147-45124006	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45113800-45123800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr11:45114800-45124200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr11:45117000-45124000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:45117000-45124000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:45117000-45126400	Weak transcription	Thymus	Thymus
6	chr11:45119800-45124200	Weak transcription	Pancreas	Pancrea
7	chr11:45120000-45123800	Weak transcription	Spleen	Spleen
8	chr11:45120000-45124000	Weak transcription	Lung	lung
9	chr11:45120000-45124200	Weak transcription	Esophagus	oesophagus
10	chr11:45120000-45124200	Weak transcription	Right Atrium	heart
11	chr11:45120200-45124000	Weak transcription	HMEC	breast
12	chr11:45120200-45124200	Weak transcription	Right Ventricle	heart
13	chr11:45120400-45123800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:45120400-45123800	Weak transcription	NHEK	skin
15	chr11:45120400-45124400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:45121800-45124200	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr11:45122000-45124800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr11:45122200-45124000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:45122200-45124000	Weak transcription	Fetal Brain Male	brain
20	chr11:45122200-45125000	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr11:45122600-45124000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:45122600-45124200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr11:45122600-45124800	Enhancers	Fetal Thymus	thymus
24	chr11:45122800-45123800	Weak transcription	Primary B cells from cord blood	blood
25	chr11:45122800-45123800	Weak transcription	Fetal Intestine Small	intestine
26	chr11:45122800-45124200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:45122800-45124200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:45122800-45124200	Weak transcription	Fetal Brain Female	brain
29	chr11:45123000-45123200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
30	chr11:45123000-45123400	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr11:45123000-45123400	Bivalent Enhancer	Fetal Muscle Leg	muscle
32	chr11:45123000-45125000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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