Variant report

Variant	rs1872887
Chromosome Location	chr11:45115422-45115423
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:45114189-45115920	NB4	blood:	n/a	chr11:45115223-45115233
2	GATA3	chr11:45114583-45115422	SK-N-SH	brain:	n/a	n/a
3	MYC	chr11:45114094-45115788	NB4	blood:	n/a	chr11:45115223-45115233

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:45115390-45115440	ovcar-3	ovarian:	n/a
2	chr11:45115390-45115440	U87	brain:	n/a
3	chr11:45115390-45115440	HRE	kidney:	n/a
4	chr11:45115390-45115440	HNPCEpiC	eye:	n/a
5	chr11:45115390-45115440	SK-N-MC	brain:	n/a
6	chr11:45115390-45115440	PrEC	prostate:	n/a
7	chr11:45115390-45115440	HL-60	blood:	n/a
8	chr11:45115390-45115440	HCM	heart:	n/a
9	chr11:45115390-45115440	NH-A	brain:	n/a
10	chr11:45115390-45115440	RPTEC	kidney:	n/a
11	chr11:45115390-45115440	AoSMC	blood vessel:	n/a
12	chr11:45115390-45115440	H1-hESC	embryonic stem cell:	embryo
13	chr11:45115390-45115440	HCT-116	colon:	n/a
14	chr11:45115390-45115440	SK-N-SH	brain:	n/a
15	chr11:45115390-45115440	T-47D	breast:	n/a
16	chr11:45115390-45115440	HCF	heart:	n/a
17	chr11:45115390-45115440	AG10803	skin:	n/a
18	chr11:45115390-45115440	HAEpiC	amniotic membrane:	n/a
19	chr11:45115390-45115440	Hela-S3	cervix:	n/a
20	chr11:45115390-45115440	AG04450	lung:	fetal
21	chr11:45115390-45115440	GM12892	blood:	n/a
22	chr11:45115390-45115440	HUVEC	blood vessel:	n/a
23	chr11:45115390-45115440	BE2_C	brain:	n/a
24	chr11:45115390-45115440	Hepatocyte	liver:	n/a
25	chr11:45115390-45115440	A549	lung:	n/a
26	chr11:45115390-45115440	IMR90	lung:	fetal
27	chr11:45115390-45115440	HRCEpiC	kidney:	n/a
28	chr11:45115390-45115440	SK-N-SH_RA	brain:	n/a
29	chr11:45115390-45115440	HMEC	breast:	n/a
30	chr11:45115390-45115440	GM12878	blood:	n/a
31	chr11:45115390-45115440	ProgFib	skin:	n/a
32	chr11:45115390-45115440	CMK	blood:	n/a
33	chr11:45115390-45115440	HEEpiC	esophagus:	n/a
34	chr11:45115390-45115440	PFSK-1	brain:	n/a
35	chr11:45115390-45115440	GM06990	blood:	n/a
36	chr11:45115390-45115440	HEK293	kidney:	embryo
37	chr11:45115390-45115440	MCF10A-Er-Src	breast:	n/a
38	chr11:45115390-45115440	PANC-1	pancreas:	n/a
39	chr11:45115390-45115440	SAEC	small airway:	n/a
40	chr11:45115390-45115440	MCF-7	breast:	n/a
41	chr11:45115390-45115440	ECC-1	luminal epithelium:	n/a
42	chr11:45115390-45115440	NT2-D1	testis:	n/a
43	chr11:45115390-45115440	NB4	blood:	n/a
44	chr11:45115390-45115440	HPAEpiC	pulmonary alveolar:	n/a
45	chr11:45115390-45115440	NHBE	bronchial:	n/a
46	chr11:45115390-45115440	Jurkat	blood:	n/a
47	chr11:45115390-45115440	SKMC	muscle:	n/a
48	chr11:45115390-45115440	BJ	skin:	n/a
49	chr11:45115390-45115440	NHDF-neo	bronchial:	n/a
50	chr11:45115390-45115440	GM12891	blood:	n/a

No data

Variant related genes	Relation type
PRDM11	TF binding region
PRDM11	CpG island

rs_ID	r²[population]
rs12789848	0.83[EUR][1000 genomes]
rs34828361	0.95[EUR][1000 genomes]
rs35163470	0.88[EUR][1000 genomes]
rs35605527	0.92[EUR][1000 genomes]
rs55797423	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56196945	0.92[EUR][1000 genomes]
rs6485590	0.94[MEX][hapmap]
rs67339128	0.83[EUR][1000 genomes]
rs72907014	0.84[EUR][1000 genomes]
rs7935697	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7936926	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7952442	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs7952646	1.00[CEU][hapmap];0.95[EUR][1000 genomes]

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45107000-45116600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:45107400-45117400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:45107600-45115600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:45107600-45117200	Enhancers	Spleen	Spleen
5	chr11:45107800-45115600	Enhancers	NHLF	lung
6	chr11:45108200-45116200	Enhancers	NHDF-Ad	bronchial
7	chr11:45108400-45115800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:45109400-45116000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr11:45110000-45116200	Weak transcription	Fetal Brain Male	brain
10	chr11:45110000-45116400	Weak transcription	Brain Substantia Nigra	brain
11	chr11:45111800-45119200	Weak transcription	Aorta	Aorta
12	chr11:45112400-45117600	Enhancers	Primary hematopoietic stem cells	blood
13	chr11:45113000-45115600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:45113200-45115600	Enhancers	Placenta	Placenta
15	chr11:45113200-45115800	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr11:45113200-45115800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr11:45113200-45115800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:45113200-45116000	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr11:45113200-45116200	Enhancers	Primary B cells from cord blood	blood
20	chr11:45113200-45116800	Enhancers	Primary B cells from peripheral blood	blood
21	chr11:45113200-45117000	Enhancers	Thymus	Thymus
22	chr11:45113200-45117000	Enhancers	NHEK	skin
23	chr11:45113200-45117200	Enhancers	Primary T cells fromperipheralblood	blood
24	chr11:45113200-45117200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr11:45113200-45117600	Enhancers	Fetal Thymus	thymus
26	chr11:45113400-45115600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:45113400-45115600	Enhancers	Fetal Intestine Small	intestine
28	chr11:45113400-45115800	Enhancers	HSMMtube	muscle
29	chr11:45113400-45116600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:45113400-45116600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:45113800-45115600	Enhancers	HMEC	breast
32	chr11:45113800-45123800	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr11:45114000-45118000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr11:45114000-45119200	Weak transcription	Left Ventricle	heart
35	chr11:45114000-45119200	Weak transcription	Pancreas	Pancrea
36	chr11:45114400-45115600	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr11:45114400-45115600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
38	chr11:45114400-45115800	Enhancers	HSMM	muscle
39	chr11:45114400-45117200	Enhancers	Dnd41	blood
40	chr11:45114400-45119200	Weak transcription	Right Atrium	heart
41	chr11:45114600-45115800	Enhancers	Duodenum Mucosa	Duodenum
42	chr11:45114600-45119400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr11:45114800-45115600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr11:45114800-45115800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
45	chr11:45114800-45119200	Weak transcription	Brain Hippocampus Middle	brain
46	chr11:45114800-45121800	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr11:45114800-45124200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:45115000-45115600	Enhancers	Fetal Brain Female	brain
49	chr11:45115000-45115800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
50	chr11:45115000-45116400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links