Variant report

Variant	rs34828361
Chromosome Location	chr11:45114009-45114010
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr11:45113144-45114048	H1-hESC	embryonic stem cell:	n/a	chr11:45113246-45113256 chr11:45113611-45113625 chr11:45113251-45113263 chr11:45113248-45113262 chr11:45113252-45113262
2	YY1	chr11:45113207-45114098	H1-hESC	embryonic stem cell:	n/a	n/a
3	YY1	chr11:45113553-45114090	H1-hESC	embryonic stem cell:	n/a	n/a
4	MAX	chr11:45113620-45114056	H1-hESC	embryonic stem cell:	n/a	n/a
5	TEAD4	chr11:45113196-45114044	H1-hESC	embryonic stem cell:	n/a	n/a
6	TEAD4	chr11:45113569-45114030	H1-hESC	embryonic stem cell:	n/a	n/a
7	MAZ	chr11:45113428-45114027	IMR90	lung:	n/a	chr11:45113529-45113539
8	MAX	chr11:45113581-45114012	H1-hESC	embryonic stem cell:	n/a	n/a
9	MAFK	chr11:45113905-45114105	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
PRDM11	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12789848	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1872887	0.95[EUR][1000 genomes]
rs34292643	0.80[EUR][1000 genomes]
rs35163470	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35605527	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55797423	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56196945	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67339128	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67712140	0.82[EUR][1000 genomes]
rs72907014	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7935697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7936926	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7952442	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7952646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45107000-45116600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:45107400-45117400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:45107600-45115600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:45107600-45117200	Enhancers	Spleen	Spleen
5	chr11:45107800-45115600	Enhancers	NHLF	lung
6	chr11:45108000-45115000	Enhancers	Adipose Nuclei	Adipose
7	chr11:45108200-45116200	Enhancers	NHDF-Ad	bronchial
8	chr11:45108400-45115800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:45108800-45114200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:45108800-45114200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr11:45109200-45115200	Weak transcription	Brain Anterior Caudate	brain
12	chr11:45109400-45116000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr11:45109800-45114600	Enhancers	Osteobl	bone
14	chr11:45110000-45115000	Weak transcription	Fetal Brain Female	brain
15	chr11:45110000-45115400	Weak transcription	Brain Angular Gyrus	brain
16	chr11:45110000-45116200	Weak transcription	Fetal Brain Male	brain
17	chr11:45110000-45116400	Weak transcription	Brain Substantia Nigra	brain
18	chr11:45110200-45115200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr11:45110400-45114600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr11:45111000-45114800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr11:45111600-45115000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr11:45111600-45115000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr11:45111800-45115400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr11:45111800-45119200	Weak transcription	Aorta	Aorta
25	chr11:45112400-45114800	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr11:45112400-45117600	Enhancers	Primary hematopoietic stem cells	blood
27	chr11:45112600-45114600	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr11:45112800-45114600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr11:45112800-45114800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:45112800-45115200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:45113000-45114800	Enhancers	Brain Hippocampus Middle	brain
32	chr11:45113000-45114800	Enhancers	Fetal Muscle Leg	muscle
33	chr11:45113000-45115600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:45113200-45114400	Enhancers	Right Atrium	heart
35	chr11:45113200-45114600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
36	chr11:45113200-45114800	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr11:45113200-45115000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr11:45113200-45115000	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr11:45113200-45115000	Enhancers	A549	lung
40	chr11:45113200-45115400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:45113200-45115400	Enhancers	Esophagus	oesophagus
42	chr11:45113200-45115600	Enhancers	Placenta	Placenta
43	chr11:45113200-45115800	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr11:45113200-45115800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr11:45113200-45115800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:45113200-45116000	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr11:45113200-45116200	Enhancers	Primary B cells from cord blood	blood
48	chr11:45113200-45116800	Enhancers	Primary B cells from peripheral blood	blood
49	chr11:45113200-45117000	Enhancers	Thymus	Thymus
50	chr11:45113200-45117000	Enhancers	NHEK	skin

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