Variant report

Variant	rs7952646
Chromosome Location	chr11:45112520-45112521
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45111160..45113728-chr11:45117212..45120988,3	K562	blood:
2	chr11:45111489..45113728-chr11:45118009..45120988,2	K562	blood:

Variant related genes	Relation type
ENSG00000019485	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11604997	1.00[JPT][hapmap]
rs12789848	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1872887	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs34292643	0.80[EUR][1000 genomes]
rs34828361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35163470	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35605527	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55797423	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56196945	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67339128	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67712140	0.82[EUR][1000 genomes]
rs72907014	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7924809	1.00[JPT][hapmap]
rs7935697	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7936926	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7948776	1.00[JPT][hapmap]
rs7952442	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45100400-45113400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:45105600-45113400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:45105600-45113400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:45106000-45113200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr11:45107000-45116600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:45107400-45117400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:45107600-45112800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:45107600-45115600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:45107600-45117200	Enhancers	Spleen	Spleen
10	chr11:45107800-45115600	Enhancers	NHLF	lung
11	chr11:45108000-45112800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr11:45108000-45115000	Enhancers	Adipose Nuclei	Adipose
13	chr11:45108200-45116200	Enhancers	NHDF-Ad	bronchial
14	chr11:45108400-45115800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:45108800-45114200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:45108800-45114200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr11:45109000-45112600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr11:45109200-45112800	Enhancers	Fetal Intestine Large	intestine
19	chr11:45109200-45115200	Weak transcription	Brain Anterior Caudate	brain
20	chr11:45109400-45116000	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr11:45109600-45112800	Enhancers	Left Ventricle	heart
22	chr11:45109600-45113200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr11:45109800-45113200	Weak transcription	Primary B cells from cord blood	blood
24	chr11:45109800-45114600	Enhancers	Osteobl	bone
25	chr11:45110000-45113600	Weak transcription	Fetal Lung	lung
26	chr11:45110000-45115000	Weak transcription	Fetal Brain Female	brain
27	chr11:45110000-45115400	Weak transcription	Brain Angular Gyrus	brain
28	chr11:45110000-45116200	Weak transcription	Fetal Brain Male	brain
29	chr11:45110000-45116400	Weak transcription	Brain Substantia Nigra	brain
30	chr11:45110200-45112800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr11:45110200-45113200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:45110200-45115200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr11:45110400-45113200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr11:45110400-45113400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:45110400-45113400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr11:45110400-45114600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr11:45111000-45114000	Enhancers	Liver	Liver
38	chr11:45111000-45114800	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr11:45111200-45113200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr11:45111200-45113600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr11:45111400-45113000	Weak transcription	Brain Hippocampus Middle	brain
42	chr11:45111400-45113200	Weak transcription	Fetal Stomach	stomach
43	chr11:45111400-45113400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr11:45111400-45113400	Weak transcription	Colonic Mucosa	Colon
45	chr11:45111400-45113400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr11:45111400-45113600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr11:45111400-45113800	Weak transcription	Stomach Smooth Muscle	stomach
48	chr11:45111600-45112800	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr11:45111600-45113200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr11:45111600-45113200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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