Variant report

Variant	rs35163470
Chromosome Location	chr11:45124855-45124856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:44955674..44957298-chr11:45124737..45126501,2	MCF-7	breast:
2	chr11:44972421..44973061-chr11:45124213..45124882,2	MCF-7	breast:
3	chr11:44948790..44949424-chr11:45124250..45125309,3	K562	blood:
4	chr11:44957679..44958688-chr11:45124318..45125241,7	MCF-7	breast:
5	chr11:44956844..44957497-chr11:45124769..45125468,2	K562	blood:
6	chr11:45124654..45125507-chr11:45353678..45354330,2	K562	blood:
7	chr11:44947956..44949051-chr11:45124050..45125094,5	MCF-7	breast:
8	chr11:44949762..44951554-chr11:45124506..45127324,2	MCF-7	breast:
9	chr11:44958830..44959345-chr11:45124818..45125332,2	MCF-7	breast:
10	chr11:44957733..44959116-chr11:45124395..45125054,4	MCF-7	breast:
11	chr11:45016013..45016946-chr11:45124445..45125309,2	MCF-7	breast:
12	chr11:44948372..44949542-chr11:45124111..45125321,9	MCF-7	breast:
13	chr11:44957718..44958870-chr11:45124382..45126053,10	K562	blood:

No data

Variant related genes	Relation type
ENSG00000175274	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12789848	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1872887	0.88[EUR][1000 genomes]
rs34828361	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35605527	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55797423	0.93[EUR][1000 genomes]
rs56196945	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67339128	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67712140	0.85[EUR][1000 genomes]
rs72907014	0.82[EUR][1000 genomes]
rs7935697	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7936926	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7952442	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7952646	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45117000-45126400	Weak transcription	Thymus	Thymus
2	chr11:45122200-45125000	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr11:45123000-45125000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr11:45123400-45125000	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr11:45123400-45132200	Enhancers	Fetal Muscle Leg	muscle
6	chr11:45123600-45125200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:45123800-45125000	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr11:45123800-45125000	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr11:45123800-45125000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
10	chr11:45123800-45125000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr11:45123800-45125200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr11:45123800-45125200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr11:45124000-45125000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr11:45124000-45125000	Enhancers	Primary T cells fromperipheralblood	blood
15	chr11:45124000-45125200	Enhancers	Primary B cells from peripheral blood	blood
16	chr11:45124000-45125200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr11:45124200-45125200	Enhancers	Fetal Intestine Large	intestine
18	chr11:45124200-45125200	Enhancers	HSMMtube	muscle
19	chr11:45124400-45125000	Enhancers	Brain Cingulate Gyrus	brain
20	chr11:45124600-45126800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:45124600-45130000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:45124800-45125000	Enhancers	Primary B cells from cord blood	blood
23	chr11:45124800-45125000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr11:45124800-45125000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:45124800-45125000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:45124800-45125000	Enhancers	Brain Anterior Caudate	brain
27	chr11:45124800-45125000	Enhancers	HMEC	breast
28	chr11:45124800-45125200	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr11:45124800-45125200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr11:45124800-45125200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:45124800-45125200	Enhancers	Muscle Satellite Cultured Cells	--
32	chr11:45124800-45125200	Enhancers	A549	lung
33	chr11:45124800-45126800	Weak transcription	Fetal Intestine Small	intestine
34	chr11:45124800-45126800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr11:45124800-45127000	Weak transcription	Right Ventricle	heart
36	chr11:45124800-45127200	Weak transcription	Fetal Brain Male	brain
37	chr11:45124800-45127400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:45124800-45127600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr11:45124800-45128400	Weak transcription	HepG2	liver
40	chr11:45124800-45129600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:45124800-45129600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:45124800-45129800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr11:45124800-45131400	Weak transcription	Brain Angular Gyrus	brain
44	chr11:45124800-45133800	Weak transcription	Right Atrium	heart

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