Variant report

Variant	rs12789848
Chromosome Location	chr11:45110640-45110641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr11:45110635-45111407	SK-N-SH	brain:	n/a	n/a
2	TCF12	chr11:45110499-45111449	SK-N-SH	brain:	n/a	chr11:45111039-45111049 chr11:45111040-45111047
3	PBX3	chr11:45110597-45111277	SK-N-SH	brain:	n/a	n/a
4	MAZ	chr11:45110366-45111841	IMR90	lung:	n/a	n/a
5	YY1	chr11:45110632-45111086	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
PRDM11	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1872887	0.83[EUR][1000 genomes]
rs34292643	0.91[EUR][1000 genomes]
rs34828361	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35163470	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35605527	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55797423	0.88[EUR][1000 genomes]
rs56196945	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67339128	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72907014	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7935697	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7936926	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7952442	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7952646	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45100400-45113400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:45105600-45112400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:45105600-45113400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:45105600-45113400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:45106000-45113200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:45106600-45111600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr11:45107000-45116600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:45107400-45111400	Enhancers	Fetal Stomach	stomach
9	chr11:45107400-45111800	Enhancers	Right Ventricle	heart
10	chr11:45107400-45112400	Enhancers	Fetal Muscle Leg	muscle
11	chr11:45107400-45117400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr11:45107600-45111400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:45107600-45111800	Enhancers	Esophagus	oesophagus
14	chr11:45107600-45112800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:45107600-45115600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:45107600-45117200	Enhancers	Spleen	Spleen
17	chr11:45107800-45111400	Enhancers	Brain Hippocampus Middle	brain
18	chr11:45107800-45115600	Enhancers	NHLF	lung
19	chr11:45108000-45111400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:45108000-45112400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:45108000-45112800	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr11:45108000-45115000	Enhancers	Adipose Nuclei	Adipose
23	chr11:45108200-45111400	Enhancers	Colonic Mucosa	Colon
24	chr11:45108200-45116200	Enhancers	NHDF-Ad	bronchial
25	chr11:45108400-45111400	Enhancers	Rectal Smooth Muscle	rectum
26	chr11:45108400-45111800	Enhancers	Colon Smooth Muscle	Colon
27	chr11:45108400-45115800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:45108600-45111200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr11:45108600-45111400	Enhancers	Stomach Smooth Muscle	stomach
30	chr11:45108800-45111000	Weak transcription	Fetal Thymus	thymus
31	chr11:45108800-45112000	Weak transcription	Small Intestine	intestine
32	chr11:45108800-45114200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr11:45108800-45114200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr11:45109000-45111200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr11:45109000-45112400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:45109000-45112600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr11:45109200-45110800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr11:45109200-45111200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr11:45109200-45111400	Enhancers	Fetal Muscle Trunk	muscle
40	chr11:45109200-45112200	Enhancers	NHEK	skin
41	chr11:45109200-45112800	Enhancers	Fetal Intestine Large	intestine
42	chr11:45109200-45115200	Weak transcription	Brain Anterior Caudate	brain
43	chr11:45109400-45111200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:45109400-45111600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr11:45109400-45116000	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr11:45109600-45111400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr11:45109600-45111800	Enhancers	Right Atrium	heart
48	chr11:45109600-45112800	Enhancers	Left Ventricle	heart
49	chr11:45109600-45113200	Weak transcription	Primary B cells from peripheral blood	blood
50	chr11:45109800-45111000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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