Variant report

Variant	rs11609322
Chromosome Location	chr12:119529835-119529836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11609302	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11609646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11609710	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11609770	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11610042	0.95[ASN][1000 genomes]
rs11610080	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11610171	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11610201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11610259	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11611821	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11611822	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11611908	0.83[ASN][1000 genomes]
rs11612089	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11613120	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11613980	0.93[ASN][1000 genomes]
rs11613998	0.84[ASN][1000 genomes]
rs11614188	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11614415	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11615966	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs28799973	0.88[ASN][1000 genomes]
rs28858405	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28875796	0.88[ASN][1000 genomes]
rs34067101	0.95[ASN][1000 genomes]
rs34915081	0.91[ASN][1000 genomes]
rs35641235	0.95[ASN][1000 genomes]
rs35850732	0.95[ASN][1000 genomes]
rs36035046	0.95[ASN][1000 genomes]
rs4145139	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4766927	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4766928	0.95[ASN][1000 genomes]
rs4766929	0.83[ASN][1000 genomes]
rs4766930	0.95[ASN][1000 genomes]
rs4766931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4767775	0.86[ASN][1000 genomes]
rs4767776	0.95[ASN][1000 genomes]
rs4767777	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4767778	0.95[ASN][1000 genomes]
rs4767779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4767780	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4767782	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4767786	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs67353211	0.95[ASN][1000 genomes]
rs67382838	0.95[ASN][1000 genomes]
rs7135298	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7295542	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7301371	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7304387	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7314453	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7315034	0.95[ASN][1000 genomes]
rs73211886	0.93[ASN][1000 genomes]
rs73211887	0.95[ASN][1000 genomes]
rs73213716	0.91[ASN][1000 genomes]
rs73213717	0.95[ASN][1000 genomes]
rs73213719	0.95[ASN][1000 genomes]
rs73213721	0.95[ASN][1000 genomes]
rs73213723	0.95[ASN][1000 genomes]
rs73213728	0.95[ASN][1000 genomes]
rs73213730	0.95[ASN][1000 genomes]
rs73213731	0.95[ASN][1000 genomes]
rs73213738	0.95[ASN][1000 genomes]
rs73213739	0.95[ASN][1000 genomes]
rs73213749	0.95[ASN][1000 genomes]
rs73213751	0.91[ASN][1000 genomes]
rs73213758	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119521000-119535600	Weak transcription	Fetal Brain Female	brain
2	chr12:119521200-119537400	Weak transcription	Brain Germinal Matrix	brain
3	chr12:119526400-119530400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr12:119528000-119530000	Enhancers	Fetal Heart	heart
5	chr12:119528600-119532000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:119528600-119534400	Weak transcription	Right Atrium	heart
7	chr12:119528800-119531600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:119528800-119534200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:119528800-119534200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr12:119529000-119531400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr12:119529000-119531600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:119529000-119531800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr12:119529200-119534400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr12:119529600-119532000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr12:119529600-119534400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr12:119529800-119531400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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