Variant report

Variant	rs28858405
Chromosome Location	chr12:119545956-119545957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11609302	1.00[ASN][1000 genomes]
rs11609322	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11609646	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11609710	1.00[ASN][1000 genomes]
rs11609770	1.00[ASN][1000 genomes]
rs11610042	1.00[ASN][1000 genomes]
rs11610080	1.00[ASN][1000 genomes]
rs11610171	1.00[ASN][1000 genomes]
rs11610201	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11610259	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11611821	1.00[ASN][1000 genomes]
rs11611822	1.00[ASN][1000 genomes]
rs11611908	0.89[ASN][1000 genomes]
rs11612089	1.00[ASN][1000 genomes]
rs11613120	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11613980	0.98[ASN][1000 genomes]
rs11613998	0.89[ASN][1000 genomes]
rs11614188	1.00[ASN][1000 genomes]
rs11614415	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11615966	1.00[ASN][1000 genomes]
rs28799973	0.84[ASN][1000 genomes]
rs28875796	0.84[ASN][1000 genomes]
rs34067101	1.00[ASN][1000 genomes]
rs34915081	0.96[ASN][1000 genomes]
rs35641235	1.00[ASN][1000 genomes]
rs35850732	1.00[ASN][1000 genomes]
rs36035046	1.00[ASN][1000 genomes]
rs4145139	1.00[ASN][1000 genomes]
rs4766927	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4766928	1.00[ASN][1000 genomes]
rs4766929	0.89[ASN][1000 genomes]
rs4766930	1.00[ASN][1000 genomes]
rs4766931	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767775	0.91[ASN][1000 genomes]
rs4767776	1.00[ASN][1000 genomes]
rs4767777	1.00[ASN][1000 genomes]
rs4767778	1.00[ASN][1000 genomes]
rs4767779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767780	1.00[ASN][1000 genomes]
rs4767782	1.00[ASN][1000 genomes]
rs4767786	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67353211	1.00[ASN][1000 genomes]
rs67382838	1.00[ASN][1000 genomes]
rs7135298	0.95[ASN][1000 genomes]
rs7295542	1.00[ASN][1000 genomes]
rs7301371	1.00[ASN][1000 genomes]
rs7304387	1.00[ASN][1000 genomes]
rs7314453	1.00[ASN][1000 genomes]
rs7315034	1.00[ASN][1000 genomes]
rs73211886	0.98[ASN][1000 genomes]
rs73211887	1.00[ASN][1000 genomes]
rs73213716	0.96[ASN][1000 genomes]
rs73213717	1.00[ASN][1000 genomes]
rs73213719	1.00[ASN][1000 genomes]
rs73213721	1.00[ASN][1000 genomes]
rs73213723	1.00[ASN][1000 genomes]
rs73213728	1.00[ASN][1000 genomes]
rs73213730	1.00[ASN][1000 genomes]
rs73213731	1.00[ASN][1000 genomes]
rs73213738	1.00[ASN][1000 genomes]
rs73213739	1.00[ASN][1000 genomes]
rs73213749	1.00[ASN][1000 genomes]
rs73213751	0.95[ASN][1000 genomes]
rs73213758	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv455725	chr12:119532430-119558565	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv560395	chr12:119532430-119558565	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119535200-119568800	Weak transcription	Fetal Brain Male	brain
2	chr12:119541400-119555800	Weak transcription	Brain Germinal Matrix	brain

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