Variant report

Variant	rs4767786
Chromosome Location	chr12:119559617-119559618
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11609322	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11609646	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11610201	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11610259	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs11613120	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11614415	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28858405	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4766927	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4766931	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4767779	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7135298	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119535200-119568800	Weak transcription	Fetal Brain Male	brain
2	chr12:119553600-119567600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr12:119553800-119569000	Weak transcription	Brain Angular Gyrus	brain
4	chr12:119558000-119564600	Strong transcription	Fetal Brain Female	brain
5	chr12:119559000-119560600	Weak transcription	Brain Germinal Matrix	brain
6	chr12:119559200-119563000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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