Variant report

Variant	rs11615715
Chromosome Location	chr12:1381173-1381174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:1380934..1382777-chr12:1388427..1390964,2	MCF-7	breast:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10491955	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11061704	0.80[EUR][1000 genomes]
rs11061733	0.81[CEU][hapmap]
rs11061736	0.88[CEU][hapmap]
rs11061741	0.88[CEU][hapmap]
rs11608884	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11611107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11613252	0.87[CEU][hapmap]
rs11614113	0.84[EUR][1000 genomes]
rs11615950	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11830570	0.84[EUR][1000 genomes]
rs11831980	0.80[EUR][1000 genomes]
rs11836372	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs12296944	0.88[CEU][hapmap]
rs12301937	0.87[CEU][hapmap]
rs12307046	0.87[CEU][hapmap]
rs12312647	0.95[CEU][hapmap]
rs12314755	0.86[CEU][hapmap]
rs12316687	0.87[CEU][hapmap]
rs12317763	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs12321803	0.87[CEU][hapmap]
rs12423086	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12424140	0.84[CEU][hapmap]
rs12425157	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12425793	0.90[ASN][1000 genomes]
rs12426549	0.85[ASN][1000 genomes]
rs12810240	0.80[EUR][1000 genomes]
rs1362265	0.87[CEU][hapmap]
rs1548805	0.88[CEU][hapmap]
rs16928276	1.00[JPT][hapmap]
rs2051844	0.84[CEU][hapmap]
rs2052185	0.87[CEU][hapmap]
rs2369703	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs28535515	0.92[EUR][1000 genomes]
rs2906113	1.00[JPT][hapmap]
rs2968879	1.00[JPT][hapmap]
rs2968887	1.00[JPT][hapmap]
rs2968894	1.00[JPT][hapmap]
rs41369952	0.87[CEU][hapmap]
rs4444139	0.83[EUR][1000 genomes]
rs56073926	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57855029	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61911968	0.90[ASN][1000 genomes]
rs61911970	0.90[ASN][1000 genomes]
rs61911971	0.90[ASN][1000 genomes]
rs61911973	0.90[ASN][1000 genomes]
rs61911974	0.90[ASN][1000 genomes]
rs61911979	0.90[ASN][1000 genomes]
rs61912028	0.85[ASN][1000 genomes]
rs61912031	0.85[ASN][1000 genomes]
rs61912033	0.90[ASN][1000 genomes]
rs61912035	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61912037	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61913071	0.84[EUR][1000 genomes]
rs721859	1.00[JPT][hapmap]
rs73025628	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73029108	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7952832	0.80[ASN][1000 genomes]
rs7962697	0.82[EUR][1000 genomes]
rs956408	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898576	chr12:813411-1553450	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948760	chr12:863833-1542875	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1052589	chr12:910460-1421493	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1045278	chr12:920251-1697030	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv529398	chr12:941915-1741311	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv468960	chr12:975276-1455106	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv556941	chr12:975276-1455106	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	nsv1044329	chr12:985144-1403020	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	nsv541340	chr12:985144-1403020	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	nsv470256	chr12:998365-1438761	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv492321	chr12:1011692-1388512	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv898579	chr12:1013176-1510505	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
13	nsv898580	chr12:1024688-1569097	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
14	nsv1036488	chr12:1041097-1445923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
15	nsv1037825	chr12:1045734-1432940	Bivalent/Poised TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
16	nsv541342	chr12:1045734-1432940	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
17	esv2762958	chr12:1049279-1554962	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
18	nsv1052559	chr12:1077964-1588543	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
19	nsv898581	chr12:1084783-1527359	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
20	nsv1046134	chr12:1153489-1675223	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
21	nsv541344	chr12:1153489-1675223	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
22	nsv1042863	chr12:1163817-1902302	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
23	nsv541345	chr12:1163817-1902302	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
24	nsv1039826	chr12:1259831-1483326	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
25	nsv930996	chr12:1270113-1473328	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
26	nsv1050361	chr12:1274052-1541558	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
27	nsv898582	chr12:1286841-1416592	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
28	nsv556944	chr12:1308553-1569097	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
29	nsv898583	chr12:1314430-1507616	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
30	nsv470257	chr12:1314430-1514021	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
31	nsv1054178	chr12:1372157-1682699	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
32	nsv541347	chr12:1372157-1682699	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:1327200-1391200	Weak transcription	Aorta	Aorta
2	chr12:1330200-1390600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr12:1330200-1391400	Weak transcription	Fetal Muscle Leg	muscle
4	chr12:1334200-1425000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr12:1341800-1420000	Weak transcription	Esophagus	oesophagus
6	chr12:1343600-1381400	Weak transcription	Right Ventricle	heart
7	chr12:1343600-1390600	Weak transcription	NHLF	lung
8	chr12:1343600-1398800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr12:1343800-1390800	Weak transcription	HSMMtube	muscle
10	chr12:1345000-1382800	Weak transcription	Spleen	Spleen
11	chr12:1347000-1392000	Weak transcription	Psoas Muscle	Psoas
12	chr12:1348400-1389600	Weak transcription	NHDF-Ad	bronchial
13	chr12:1355000-1390600	Weak transcription	Osteobl	bone
14	chr12:1356200-1391200	Weak transcription	Fetal Kidney	kidney
15	chr12:1359600-1391000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr12:1360000-1384200	Weak transcription	Brain Angular Gyrus	brain
17	chr12:1360200-1396600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr12:1360400-1387400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr12:1362000-1386800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr12:1363200-1386800	Weak transcription	HepG2	liver
21	chr12:1364800-1408600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr12:1366400-1386400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr12:1366600-1392000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr12:1366600-1418000	Weak transcription	Lung	lung
25	chr12:1369400-1427600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr12:1370400-1391000	Weak transcription	Fetal Brain Female	brain
27	chr12:1370800-1386200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr12:1372400-1389800	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr12:1372600-1381200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr12:1372600-1389000	Weak transcription	Fetal Brain Male	brain
31	chr12:1372800-1382400	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr12:1372800-1385800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr12:1372800-1386800	Weak transcription	Fetal Heart	heart
34	chr12:1372800-1391000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr12:1372800-1399200	Weak transcription	Placenta	Placenta
36	chr12:1373400-1385800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr12:1373400-1399600	Weak transcription	Fetal Intestine Large	intestine
38	chr12:1373600-1386200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr12:1373600-1386400	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr12:1373600-1388200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr12:1373600-1391000	Weak transcription	Fetal Stomach	stomach
42	chr12:1373600-1398800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr12:1373600-1399000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr12:1373600-1402600	Weak transcription	Hela-S3	cervix
45	chr12:1373800-1410400	Weak transcription	Fetal Intestine Small	intestine
46	chr12:1374000-1386800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr12:1374200-1384600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr12:1374200-1404200	Weak transcription	Left Ventricle	heart
49	chr12:1374200-1423200	Weak transcription	NHEK	skin
50	chr12:1374400-1389600	Weak transcription	Stomach Smooth Muscle	stomach

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