Variant report
Variant | rs11616428 |
---|---|
Chromosome Location | chr13:93376790-93376791 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs12429179 | 0.90[JPT][hapmap] |
rs12430852 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12431356 | 0.90[JPT][hapmap] |
rs17233808 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs17233815 | 0.83[CHB][hapmap];0.90[JPT][hapmap] |
rs17299543 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.94[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs17299613 | 0.90[JPT][hapmap] |
rs1933196 | 1.00[CEU][hapmap];0.85[JPT][hapmap] |
rs60912456 | 0.81[ASN][1000 genomes] |
rs67583228 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv456071 | chr13:93279563-93377562 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv562745 | chr13:93279563-93377562 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
3 | nsv869070 | chr13:93347616-94286933 | Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
No data |