Variant report
| Variant | rs17299613 |
|---|---|
| Chromosome Location | chr13:93389448-93389449 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:93388404..93390575-chr13:93396600..93398379,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs1075131 | 0.85[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11616428 | 0.90[JPT][hapmap] |
| rs12429179 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs12430852 | 0.92[AMR][1000 genomes] |
| rs12431356 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs17233808 | 0.86[JPT][hapmap] |
| rs17233815 | 0.81[CHD][hapmap];0.92[GIH][hapmap] |
| rs17299543 | 0.87[GIH][hapmap];0.94[MEX][hapmap];0.85[AMR][1000 genomes] |
| rs1933196 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap] |
| rs67025056 | 0.87[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs67583228 | 0.92[AMR][1000 genomes] |
| rs72632633 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869070 | chr13:93347616-94286933 | Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
