Variant report
| Variant | rs12429179 |
|---|---|
| Chromosome Location | chr13:93424335-93424336 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs1075131 | 0.93[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11616428 | 0.90[JPT][hapmap] |
| rs11839546 | 0.81[CHB][hapmap] |
| rs12429979 | 1.00[CEU][hapmap] |
| rs12431282 | 1.00[CEU][hapmap] |
| rs12431356 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1409265 | 1.00[CEU][hapmap] |
| rs1475353 | 0.82[CHB][hapmap] |
| rs17233808 | 0.86[JPT][hapmap] |
| rs17299613 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs17299669 | 1.00[CEU][hapmap] |
| rs17299725 | 1.00[CEU][hapmap] |
| rs1933196 | 0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs1998830 | 1.00[CEU][hapmap] |
| rs67025056 | 0.95[AMR][1000 genomes];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869070 | chr13:93347616-94286933 | Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv456072 | chr13:93419362-93506864 | Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv562746 | chr13:93419362-93506864 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
