Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11620499	0.80[ASW][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.82[TSI][hapmap]
rs11838810	1.00[ASW][hapmap];0.94[LWK][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs11838825	0.85[AFR][1000 genomes]
rs11839546	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11840951	0.92[ASW][hapmap];0.94[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap]
rs12429179	0.82[CHB][hapmap]
rs12431356	0.82[CHB][hapmap]
rs1409264	0.89[CEU][hapmap];0.88[LWK][hapmap]
rs17188613	0.92[ASW][hapmap]
rs17267348	0.92[ASW][hapmap]
rs17299557	0.86[JPT][hapmap];0.87[MEX][hapmap];0.81[AMR][1000 genomes]
rs1933192	0.85[ASW][hapmap]
rs59244654	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60005783	0.88[AFR][1000 genomes]
rs6492627	0.95[CEU][hapmap];0.83[TSI][hapmap]
rs66498781	0.84[AFR][1000 genomes]
rs66904991	0.88[AFR][1000 genomes]
rs67937794	0.88[AFR][1000 genomes]
rs7322310	0.85[CEU][hapmap]
rs7994061	0.95[YRI][hapmap];0.88[AFR][1000 genomes]
rs9556207	0.95[CEU][hapmap]
rs9561137	0.95[CEU][hapmap]
rs9561144	0.95[CEU][hapmap];0.89[TSI][hapmap]
rs994993	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv526003	chr13:93396655-93403783	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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