Variant report

Variant	rs7994061
Chromosome Location	chr13:93427789-93427790
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11838810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11838825	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11839546	0.89[CEU][hapmap];0.80[YRI][hapmap]
rs11840951	1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap]
rs1475353	0.95[YRI][hapmap]
rs16947848	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs17188613	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs17267264	1.00[CHB][hapmap]
rs17267348	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs17267362	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs17267369	1.00[CHB][hapmap]
rs1933191	0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1933192	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs4435099	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs57888578	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60005783	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66498781	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66904991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67937794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72641020	0.91[ASN][1000 genomes]
rs72641054	0.91[ASN][1000 genomes]
rs72641100	0.95[ASN][1000 genomes]
rs7322310	0.81[CEU][hapmap]
rs994993	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv456072	chr13:93419362-93506864	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562746	chr13:93419362-93506864	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93427600-93428200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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