Variant report

Variant	rs1933191
Chromosome Location	chr13:93398290-93398291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11838810	0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11838825	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16947848	0.91[ASN][1000 genomes]
rs17267362	0.91[ASN][1000 genomes]
rs1933192	0.95[ASN][1000 genomes]
rs4435099	0.91[ASN][1000 genomes]
rs57888578	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs60005783	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs66498781	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs66904991	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs67937794	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs72641020	0.91[ASN][1000 genomes]
rs72641054	0.91[ASN][1000 genomes]
rs72641100	0.95[ASN][1000 genomes]
rs7994061	0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs994993	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv526003	chr13:93396655-93403783	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93397800-93398400	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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