Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11838810	1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[ASN][1000 genomes]
rs11838825	0.91[ASN][1000 genomes]
rs11840951	1.00[CHB][hapmap];0.90[CHD][hapmap]
rs16947848	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17188613	1.00[CHB][hapmap];0.82[CHD][hapmap]
rs17267264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17267348	1.00[CHB][hapmap];0.82[CHD][hapmap]
rs17267362	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17267369	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1933191	0.91[ASN][1000 genomes]
rs1933192	1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[ASN][1000 genomes]
rs57888578	0.91[ASN][1000 genomes]
rs60005783	0.91[ASN][1000 genomes]
rs66498781	0.91[ASN][1000 genomes]
rs66904991	0.91[ASN][1000 genomes]
rs67937794	0.91[ASN][1000 genomes]
rs72641020	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72641054	1.00[ASN][1000 genomes]
rs72641100	0.95[ASN][1000 genomes]
rs7994061	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs994993	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456070	chr13:93208593-93298523	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv562730	chr13:93208593-93298523	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1124	chr13:93242968-93289282	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1045395	chr13:93248456-93323269	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv900906	chr13:93279563-93305318	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv456071	chr13:93279563-93377562	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv562745	chr13:93279563-93377562	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv18734	chr13:93279898-93352628	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv521051	chr13:93284783-93289163	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv976144	chr13:93288140-93291025	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4435099	SOX21	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93287800-93289000	Enhancers	Fetal Heart	heart

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