Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11838810	0.92[ASW][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs11838825	0.87[ASN][1000 genomes]
rs11840951	0.84[ASW][hapmap];1.00[CHB][hapmap];0.90[MEX][hapmap]
rs1475353	0.92[ASW][hapmap]
rs16947848	1.00[CHB][hapmap];0.82[CHD][hapmap];0.80[MEX][hapmap];0.95[ASN][1000 genomes]
rs17188613	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs17267264	1.00[CHB][hapmap]
rs17267362	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs17267369	1.00[CHB][hapmap];0.82[CHD][hapmap]
rs1933191	0.95[ASN][1000 genomes]
rs1933192	0.92[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.85[MEX][hapmap];0.94[MKK][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4435099	1.00[CHB][hapmap];0.82[CHD][hapmap];0.95[ASN][1000 genomes]
rs57888578	0.87[ASN][1000 genomes]
rs60005783	0.87[ASN][1000 genomes]
rs66498781	0.87[ASN][1000 genomes]
rs66904991	0.87[ASN][1000 genomes]
rs67937794	0.87[ASN][1000 genomes]
rs72641020	0.95[ASN][1000 genomes]
rs72641054	0.95[ASN][1000 genomes]
rs72641100	0.91[ASN][1000 genomes]
rs7994061	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs994993	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456071	chr13:93279563-93377562	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv562745	chr13:93279563-93377562	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17267348	PCYOX1L	trans	cerebellum	SCAN
rs17267348	ABCC4	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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