Variant report

Variant	rs11839546
Chromosome Location	chr13:93424037-93424038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1075131	0.82[ASN][1000 genomes]
rs11070032	0.87[EUR][1000 genomes]
rs11620499	0.85[JPT][hapmap]
rs11838810	0.89[CEU][hapmap]
rs12429179	0.81[CHB][hapmap]
rs12431356	0.81[CHB][hapmap]
rs1475353	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17299557	0.81[JPT][hapmap]
rs6492627	0.89[CEU][hapmap]
rs66498781	0.84[AFR][1000 genomes]
rs67025056	0.82[ASN][1000 genomes]
rs7322310	1.00[CEU][hapmap]
rs7994061	0.89[CEU][hapmap];0.80[YRI][hapmap]
rs9556207	0.89[CEU][hapmap]
rs9561137	0.89[CEU][hapmap]
rs9561144	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv456072	chr13:93419362-93506864	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562746	chr13:93419362-93506864	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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