Variant report

Variant	rs11617018
Chromosome Location	chr13:51511131-51511132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51504617..51506922-chr13:51508240..51511207,2	K562	blood:
2	chr13:51511006..51512738-chr13:51514489..51516237,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11618615	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs1555625	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes]
rs17589753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17649209	1.00[GIH][hapmap]
rs17649503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1927742	0.88[CEU][hapmap];0.83[GIH][hapmap];0.95[TSI][hapmap]
rs56870509	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61067727	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7336417	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900077	chr13:51446114-51514831	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51486600-51528400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:51491600-51551000	Weak transcription	Small Intestine	intestine
3	chr13:51496600-51529800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:51496800-51533200	Weak transcription	NH-A	brain
5	chr13:51499600-51511800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr13:51501800-51525000	Weak transcription	Brain Substantia Nigra	brain
7	chr13:51502400-51511800	Weak transcription	Colonic Mucosa	Colon
8	chr13:51502400-51530800	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr13:51502400-51531200	Weak transcription	NHLF	lung
10	chr13:51502600-51511600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr13:51503000-51531600	Strong transcription	Primary B cells from peripheral blood	blood
12	chr13:51503000-51538200	Weak transcription	HMEC	breast
13	chr13:51503200-51513200	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr13:51503200-51520800	Weak transcription	HSMMtube	muscle
15	chr13:51503200-51549400	Weak transcription	Psoas Muscle	Psoas
16	chr13:51503400-51511600	Strong transcription	Primary T cells from cord blood	blood
17	chr13:51503400-51512600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr13:51503400-51513000	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr13:51503400-51514000	Strong transcription	Thymus	Thymus
20	chr13:51503400-51528200	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr13:51503400-51531600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr13:51503600-51512800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr13:51503600-51513200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr13:51503600-51528400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr13:51503600-51551800	Strong transcription	Dnd41	blood
26	chr13:51503800-51518600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr13:51504400-51513200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
28	chr13:51504400-51551800	Strong transcription	Fetal Thymus	thymus
29	chr13:51505400-51511600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr13:51505600-51513200	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr13:51505800-51527200	Weak transcription	Hela-S3	cervix
32	chr13:51506200-51525800	Weak transcription	HUVEC	blood vessel
33	chr13:51506600-51513000	Strong transcription	Ovary	ovary
34	chr13:51506600-51538600	Weak transcription	K562	blood
35	chr13:51506800-51512000	Weak transcription	NHDF-Ad	bronchial
36	chr13:51507000-51511200	Strong transcription	Fetal Muscle Leg	muscle
37	chr13:51507000-51511400	Strong transcription	Liver	Liver
38	chr13:51507600-51514800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr13:51507800-51512800	Strong transcription	Rectal Smooth Muscle	rectum
40	chr13:51508000-51513000	Strong transcription	Fetal Intestine Large	intestine
41	chr13:51508200-51511600	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr13:51508200-51511800	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr13:51508200-51512800	Strong transcription	Fetal Brain Male	brain
44	chr13:51508200-51513200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr13:51508600-51527600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr13:51508800-51513000	Strong transcription	Stomach Smooth Muscle	stomach
47	chr13:51509000-51512200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr13:51509200-51512200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
49	chr13:51509400-51511800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr13:51509400-51511800	Enhancers	Primary neutrophils fromperipheralblood	blood

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