Variant report

Variant	rs1927742
Chromosome Location	chr13:51517599-51517600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11617018	0.88[CEU][hapmap];0.83[GIH][hapmap];0.95[TSI][hapmap]
rs1555625	0.88[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17075039	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17589753	0.88[CEU][hapmap]
rs17649209	0.83[GIH][hapmap]
rs17649503	0.88[CEU][hapmap]
rs56870509	0.86[AMR][1000 genomes]
rs56872702	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61067727	0.86[AMR][1000 genomes]
rs61564818	0.83[ASN][1000 genomes]
rs7336417	1.00[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51486600-51528400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:51491600-51551000	Weak transcription	Small Intestine	intestine
3	chr13:51496600-51529800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:51496800-51533200	Weak transcription	NH-A	brain
5	chr13:51501800-51525000	Weak transcription	Brain Substantia Nigra	brain
6	chr13:51502400-51530800	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr13:51502400-51531200	Weak transcription	NHLF	lung
8	chr13:51503000-51531600	Strong transcription	Primary B cells from peripheral blood	blood
9	chr13:51503000-51538200	Weak transcription	HMEC	breast
10	chr13:51503200-51520800	Weak transcription	HSMMtube	muscle
11	chr13:51503200-51549400	Weak transcription	Psoas Muscle	Psoas
12	chr13:51503400-51528200	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr13:51503400-51531600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr13:51503600-51528400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr13:51503600-51551800	Strong transcription	Dnd41	blood
16	chr13:51503800-51518600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr13:51504400-51551800	Strong transcription	Fetal Thymus	thymus
18	chr13:51505800-51527200	Weak transcription	Hela-S3	cervix
19	chr13:51506200-51525800	Weak transcription	HUVEC	blood vessel
20	chr13:51506600-51538600	Weak transcription	K562	blood
21	chr13:51508600-51527600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr13:51509400-51541400	Weak transcription	A549	lung
23	chr13:51509600-51519200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr13:51509600-51521000	Weak transcription	Aorta	Aorta
25	chr13:51509600-51523400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr13:51509600-51538800	Weak transcription	Right Ventricle	heart
27	chr13:51509600-51542400	Weak transcription	NHEK	skin
28	chr13:51509800-51522800	Weak transcription	Colon Smooth Muscle	Colon
29	chr13:51509800-51527600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr13:51509800-51529600	Weak transcription	Brain Angular Gyrus	brain
31	chr13:51509800-51543200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr13:51509800-51550200	Weak transcription	Brain Cingulate Gyrus	brain
33	chr13:51510000-51520400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr13:51510000-51522600	Weak transcription	HSMM	muscle
35	chr13:51510000-51539600	Weak transcription	Fetal Heart	heart
36	chr13:51510000-51545400	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr13:51510200-51518000	Weak transcription	Esophagus	oesophagus
38	chr13:51510200-51524800	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr13:51510200-51525400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr13:51510200-51526400	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr13:51510200-51543800	Weak transcription	Pancreas	Pancrea
42	chr13:51510200-51545000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr13:51510200-51546200	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr13:51510400-51527400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr13:51510600-51520600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr13:51510600-51531600	Strong transcription	Primary B cells from cord blood	blood
47	chr13:51511800-51524200	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr13:51512000-51546200	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr13:51512200-51517600	Weak transcription	Brain Hippocampus Middle	brain
50	chr13:51512200-51517600	Weak transcription	Fetal Brain Female	brain

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