The 2.0 version of rSNPBase

Variant report

Variant rs17075039
Chromosome Location chr13:51548404-51548405
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:51491600-51551000 Weak transcription Small Intestine intestine
2 chr13:51503200-51549400 Weak transcription Psoas Muscle Psoas
3 chr13:51503600-51551800 Strong transcription Dnd41 blood
4 chr13:51504400-51551800 Strong transcription Fetal Thymus thymus
5 chr13:51509800-51550200 Weak transcription Brain Cingulate Gyrus brain
6 chr13:51513000-51552200 Weak transcription Skeletal Muscle Male skeletal muscle
7 chr13:51516400-51548800 Weak transcription Gastric stomach
8 chr13:51518000-51550400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
9 chr13:51518000-51551200 Weak transcription Placenta Placenta
10 chr13:51518600-51552000 Weak transcription Fetal Brain Female brain
11 chr13:51518800-51549000 Weak transcription Fetal Intestine Small intestine
12 chr13:51521400-51549000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
13 chr13:51523600-51555200 Weak transcription HSMMtube muscle
14 chr13:51523800-51550600 Weak transcription HSMM muscle
15 chr13:51524600-51550400 Weak transcription Rectal Smooth Muscle rectum
16 chr13:51524800-51552200 Weak transcription Colonic Mucosa Colon
17 chr13:51526200-51549000 Weak transcription Duodenum Smooth Muscle Duodenum
18 chr13:51526200-51550000 Weak transcription Primary neutrophils fromperipheralblood blood
19 chr13:51530600-51563400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
20 chr13:51532600-51551400 Strong transcription Primary B cells from peripheral blood blood
21 chr13:51533400-51552200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr13:51535800-51563200 Weak transcription Cortex derived primary cultured neurospheres brain
23 chr13:51537000-51550600 Strong transcription Primary T helper cells fromperipheralblood blood
24 chr13:51537800-51552000 Strong transcription Primary T cells from cord blood blood
25 chr13:51539200-51565400 Weak transcription Esophagus oesophagus
26 chr13:51539600-51564600 Weak transcription Brain Angular Gyrus brain
27 chr13:51539600-51564800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr13:51539800-51548800 Weak transcription Fetal Intestine Large intestine
29 chr13:51539800-51550600 Weak transcription Left Ventricle heart
30 chr13:51539800-51551200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
31 chr13:51539800-51551600 Weak transcription Aorta Aorta
32 chr13:51539800-51551800 Weak transcription Rectal Mucosa Donor 31 rectum
33 chr13:51539800-51552400 Weak transcription GM12878-XiMat blood
34 chr13:51539800-51553200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr13:51539800-51553400 Weak transcription Fetal Kidney kidney
36 chr13:51539800-51555000 Weak transcription Brain Hippocampus Middle brain
37 chr13:51540200-51552400 Weak transcription Fetal Muscle Trunk muscle
38 chr13:51540400-51552600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr13:51540600-51551200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr13:51540600-51559000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
41 chr13:51540800-51555800 Weak transcription ES-I3 Cell Line embryonic stem cell
42 chr13:51541200-51553200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
43 chr13:51542000-51549000 Weak transcription Duodenum Mucosa Duodenum
44 chr13:51542200-51565400 Weak transcription Rectal Mucosa Donor 29 rectum
45 chr13:51543000-51549600 Weak transcription Brain Inferior Temporal Lobe brain
46 chr13:51543600-51548600 Weak transcription Primary hematopoietic stem cells blood
47 chr13:51544000-51551800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
48 chr13:51544400-51548800 Weak transcription Spleen Spleen
49 chr13:51544600-51548800 Weak transcription Ovary ovary
50 chr13:51544600-51549400 Weak transcription Lung lung

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Last update: Aug 31, 2015