The 2.0 version of rSNPBase

Variant report

Variant rs6561604
Chromosome Location chr13:51549557-51549558
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:51491600-51551000 Weak transcription Small Intestine intestine
2 chr13:51503600-51551800 Strong transcription Dnd41 blood
3 chr13:51504400-51551800 Strong transcription Fetal Thymus thymus
4 chr13:51509800-51550200 Weak transcription Brain Cingulate Gyrus brain
5 chr13:51513000-51552200 Weak transcription Skeletal Muscle Male skeletal muscle
6 chr13:51518000-51550400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr13:51518000-51551200 Weak transcription Placenta Placenta
8 chr13:51518600-51552000 Weak transcription Fetal Brain Female brain
9 chr13:51523600-51555200 Weak transcription HSMMtube muscle
10 chr13:51523800-51550600 Weak transcription HSMM muscle
11 chr13:51524600-51550400 Weak transcription Rectal Smooth Muscle rectum
12 chr13:51524800-51552200 Weak transcription Colonic Mucosa Colon
13 chr13:51526200-51550000 Weak transcription Primary neutrophils fromperipheralblood blood
14 chr13:51530600-51563400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
15 chr13:51532600-51551400 Strong transcription Primary B cells from peripheral blood blood
16 chr13:51533400-51552200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
17 chr13:51535800-51563200 Weak transcription Cortex derived primary cultured neurospheres brain
18 chr13:51537000-51550600 Strong transcription Primary T helper cells fromperipheralblood blood
19 chr13:51537800-51552000 Strong transcription Primary T cells from cord blood blood
20 chr13:51539200-51565400 Weak transcription Esophagus oesophagus
21 chr13:51539600-51564600 Weak transcription Brain Angular Gyrus brain
22 chr13:51539600-51564800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr13:51539800-51550600 Weak transcription Left Ventricle heart
24 chr13:51539800-51551200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
25 chr13:51539800-51551600 Weak transcription Aorta Aorta
26 chr13:51539800-51551800 Weak transcription Rectal Mucosa Donor 31 rectum
27 chr13:51539800-51552400 Weak transcription GM12878-XiMat blood
28 chr13:51539800-51553200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr13:51539800-51553400 Weak transcription Fetal Kidney kidney
30 chr13:51539800-51555000 Weak transcription Brain Hippocampus Middle brain
31 chr13:51540200-51552400 Weak transcription Fetal Muscle Trunk muscle
32 chr13:51540400-51552600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr13:51540600-51551200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
34 chr13:51540600-51559000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
35 chr13:51540800-51555800 Weak transcription ES-I3 Cell Line embryonic stem cell
36 chr13:51541200-51553200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
37 chr13:51542200-51565400 Weak transcription Rectal Mucosa Donor 29 rectum
38 chr13:51543000-51549600 Weak transcription Brain Inferior Temporal Lobe brain
39 chr13:51544000-51551800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
40 chr13:51544600-51552800 Weak transcription Brain Germinal Matrix brain
41 chr13:51544800-51563400 Weak transcription Colon Smooth Muscle Colon
42 chr13:51545400-51552800 Weak transcription Pancreas Pancrea
43 chr13:51545400-51558000 Weak transcription Primary T cells fromperipheralblood blood
44 chr13:51546000-51554600 Weak transcription Fetal Stomach stomach
45 chr13:51546200-51551200 Weak transcription Breast Myoepithelial Primary Cells Breast
46 chr13:51546200-51552800 Weak transcription Liver Liver
47 chr13:51547600-51551400 Strong transcription Primary T regulatory cells fromperipheralblood blood
48 chr13:51548000-51549600 Strong transcription Monocytes-CD14+_RO01746 blood
49 chr13:51548000-51551600 Strong transcription Thymus Thymus
50 chr13:51548200-51550400 Weak transcription Primary Natural Killer cells fromperipheralblood blood

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Last update: Aug 31, 2015