Variant report

Variant	rs61564818
Chromosome Location	chr13:51509989-51509990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51504617..51506922-chr13:51508240..51511207,2	K562	blood:
2	chr13:51509255..51511069-chr13:51514607..51517534,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1462032	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1555625	0.83[ASN][1000 genomes]
rs1927742	0.83[ASN][1000 genomes]
rs56872702	0.81[ASN][1000 genomes]
rs6561604	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7317520	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7336417	0.85[ASN][1000 genomes]
rs768015	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9568484	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900077	chr13:51446114-51514831	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51486600-51528400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:51491600-51551000	Weak transcription	Small Intestine	intestine
3	chr13:51496600-51529800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:51496800-51510600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:51496800-51533200	Weak transcription	NH-A	brain
6	chr13:51499600-51511800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr13:51501800-51525000	Weak transcription	Brain Substantia Nigra	brain
8	chr13:51502400-51511800	Weak transcription	Colonic Mucosa	Colon
9	chr13:51502400-51530800	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr13:51502400-51531200	Weak transcription	NHLF	lung
11	chr13:51502600-51511600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr13:51503000-51531600	Strong transcription	Primary B cells from peripheral blood	blood
13	chr13:51503000-51538200	Weak transcription	HMEC	breast
14	chr13:51503200-51513200	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr13:51503200-51520800	Weak transcription	HSMMtube	muscle
16	chr13:51503200-51549400	Weak transcription	Psoas Muscle	Psoas
17	chr13:51503400-51510000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr13:51503400-51510200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:51503400-51511600	Strong transcription	Primary T cells from cord blood	blood
20	chr13:51503400-51512600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr13:51503400-51513000	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr13:51503400-51514000	Strong transcription	Thymus	Thymus
23	chr13:51503400-51528200	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr13:51503400-51531600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr13:51503600-51510200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr13:51503600-51510400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr13:51503600-51512800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr13:51503600-51513200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr13:51503600-51528400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr13:51503600-51551800	Strong transcription	Dnd41	blood
31	chr13:51503800-51510000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr13:51503800-51518600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr13:51504400-51510400	Strong transcription	Duodenum Mucosa	Duodenum
34	chr13:51504400-51513200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
35	chr13:51504400-51551800	Strong transcription	Fetal Thymus	thymus
36	chr13:51504600-51511000	Strong transcription	GM12878-XiMat	blood
37	chr13:51505400-51511600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr13:51505600-51513200	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr13:51505800-51527200	Weak transcription	Hela-S3	cervix
40	chr13:51506000-51510200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr13:51506200-51510400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr13:51506200-51525800	Weak transcription	HUVEC	blood vessel
43	chr13:51506600-51510000	Strong transcription	Placenta	Placenta
44	chr13:51506600-51510000	Strong transcription	Left Ventricle	heart
45	chr13:51506600-51510400	Strong transcription	Fetal Intestine Small	intestine
46	chr13:51506600-51510400	Strong transcription	Fetal Stomach	stomach
47	chr13:51506600-51510400	Strong transcription	Lung	lung
48	chr13:51506600-51513000	Strong transcription	Ovary	ovary
49	chr13:51506600-51538600	Weak transcription	K562	blood
50	chr13:51506800-51510000	Strong transcription	Adipose Nuclei	Adipose

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