Variant report

Variant	rs56870509
Chromosome Location	chr13:51531530-51531531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51524476..51527887-chr13:51528238..51532155,3	K562	blood:
2	chr13:51529491..51531688-chr13:51532827..51535707,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11617018	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11618615	0.86[EUR][1000 genomes]
rs17075039	0.83[AMR][1000 genomes]
rs17589753	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17649503	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1927742	0.86[AMR][1000 genomes]
rs56872702	0.86[AMR][1000 genomes]
rs61067727	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7336417	0.86[AMR][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51491600-51551000	Weak transcription	Small Intestine	intestine
2	chr13:51496800-51533200	Weak transcription	NH-A	brain
3	chr13:51503000-51531600	Strong transcription	Primary B cells from peripheral blood	blood
4	chr13:51503000-51538200	Weak transcription	HMEC	breast
5	chr13:51503200-51549400	Weak transcription	Psoas Muscle	Psoas
6	chr13:51503400-51531600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr13:51503600-51551800	Strong transcription	Dnd41	blood
8	chr13:51504400-51551800	Strong transcription	Fetal Thymus	thymus
9	chr13:51506600-51538600	Weak transcription	K562	blood
10	chr13:51509400-51541400	Weak transcription	A549	lung
11	chr13:51509600-51538800	Weak transcription	Right Ventricle	heart
12	chr13:51509600-51542400	Weak transcription	NHEK	skin
13	chr13:51509800-51543200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr13:51509800-51550200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr13:51510000-51539600	Weak transcription	Fetal Heart	heart
16	chr13:51510000-51545400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr13:51510200-51543800	Weak transcription	Pancreas	Pancrea
18	chr13:51510200-51545000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr13:51510200-51546200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr13:51510600-51531600	Strong transcription	Primary B cells from cord blood	blood
21	chr13:51512000-51546200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr13:51512200-51531800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr13:51512200-51532000	Strong transcription	Primary hematopoietic stem cells	blood
24	chr13:51512200-51539400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr13:51512400-51543800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr13:51512800-51542400	Weak transcription	Fetal Brain Male	brain
27	chr13:51513000-51543800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr13:51513000-51552200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr13:51513200-51540600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr13:51513200-51546800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr13:51515200-51537400	Weak transcription	HepG2	liver
32	chr13:51516400-51548800	Weak transcription	Gastric	stomach
33	chr13:51517200-51543800	Weak transcription	Spleen	Spleen
34	chr13:51517400-51535200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr13:51518000-51538200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr13:51518000-51550400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr13:51518000-51551200	Weak transcription	Placenta	Placenta
38	chr13:51518200-51532000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr13:51518200-51539000	Weak transcription	Esophagus	oesophagus
40	chr13:51518200-51543800	Weak transcription	Lung	lung
41	chr13:51518600-51539000	Weak transcription	Ovary	ovary
42	chr13:51518600-51552000	Weak transcription	Fetal Brain Female	brain
43	chr13:51518800-51549000	Weak transcription	Fetal Intestine Small	intestine
44	chr13:51519200-51531800	Strong transcription	Primary T cells from cord blood	blood
45	chr13:51521400-51538600	Weak transcription	Aorta	Aorta
46	chr13:51521400-51549000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr13:51523400-51534000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr13:51523600-51555200	Weak transcription	HSMMtube	muscle
49	chr13:51523800-51546000	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr13:51523800-51550600	Weak transcription	HSMM	muscle

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