Variant report

Variant	rs11617333
Chromosome Location	chr13:62783736-62783737
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1016025	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11148578	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17212182	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17214454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17227743	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17295075	1.00[ASW][hapmap];0.80[GIH][hapmap]
rs17295214	1.00[ASW][hapmap];0.80[GIH][hapmap]
rs41492846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4886402	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55724974	0.86[EUR][1000 genomes]
rs73188364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73207784	1.00[AFR][1000 genomes]
rs73219722	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73219756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8000911	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832630	chr13:62651865-62811428	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv900257	chr13:62782367-62907090	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62783400-62783800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr13:62783400-62783800	Flanking Active TSS	GM12878-XiMat	blood
3	chr13:62783400-62784000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr13:62783600-62784000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr13:62783600-62784000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr13:62783600-62784200	Active TSS	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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