Variant report

Variant	rs73219722
Chromosome Location	chr13:62742152-62742153
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1016025	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11148578	0.91[EUR][1000 genomes]
rs11617333	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17212182	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17214454	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17227743	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs41492846	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4886402	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55724974	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73188364	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73207784	0.91[AMR][1000 genomes]
rs73219756	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8000911	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv832630	chr13:62651865-62811428	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62741000-62748200	Weak transcription	Gastric	stomach
2	chr13:62742000-62742200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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