Variant report

Variant	rs17227743
Chromosome Location	chr13:62863888-62863889
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1016025	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11148578	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11617333	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11617682	0.82[EUR][1000 genomes]
rs12429775	1.00[AFR][1000 genomes]
rs17212182	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17214454	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17229330	1.00[AFR][1000 genomes]
rs17295075	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs17295214	1.00[ASW][hapmap]
rs41492846	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4886402	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55724974	0.81[EUR][1000 genomes]
rs73188364	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73219722	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73219756	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8000911	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948810	chr13:62003256-62968196	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv900257	chr13:62782367-62907090	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv561893	chr13:62807570-62885877	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
4	nsv1038992	chr13:62827929-63369497	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv541795	chr13:62827929-63369497	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1038215	chr13:62836702-63405446	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:62863400-62864600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:62863600-62864600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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