Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39454721..39457366-chr13:39469258..39471504,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11147741	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11616774	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12184594	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12430103	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13378272	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1540131	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1894105	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1945495	0.82[CEU][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes]
rs1945502	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1945511	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2027770	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2226913	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4146172	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4146173	0.97[ASN][1000 genomes]
rs4943613	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61945502	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6563646	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6563647	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6563649	0.99[ASN][1000 genomes]
rs7317127	0.99[ASN][1000 genomes]
rs7324518	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7491289	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7982521	0.83[EUR][1000 genomes]
rs7983715	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7989068	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39462800-39471800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:39463000-39476200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:39468600-39470600	Enhancers	Psoas Muscle	Psoas
4	chr13:39470000-39470400	Enhancers	Fetal Kidney	kidney

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