Variant report

Variant	rs11147741
Chromosome Location	chr13:39478622-39478623
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11616774	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11618539	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12184594	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12430103	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13378272	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13379009	0.87[EUR][1000 genomes]
rs1945514	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4146172	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4488330	0.86[EUR][1000 genomes]
rs56247479	0.86[EUR][1000 genomes]
rs61945502	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61945504	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7330643	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7982521	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7982923	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7983069	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7983715	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7986250	0.87[EUR][1000 genomes]
rs7989068	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9594306	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9603467	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9603469	0.83[EUR][1000 genomes]
rs9603474	0.87[EUR][1000 genomes]
rs9603480	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39477200-39480000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr13:39477400-39478800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:39477400-39479000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr13:39477600-39478800	Weak transcription	NHEK	skin
5	chr13:39477600-39479000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr13:39477600-39479000	Weak transcription	HMEC	breast

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