Variant report
| Variant | rs9603480 |
|---|---|
| Chromosome Location | chr13:39511766-39511767 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr13:39511710-39511852 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ANKRD26P2 | TF binding region |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11147741 | 0.84[EUR][1000 genomes] |
| rs11619578 | 0.82[EUR][1000 genomes] |
| rs12184594 | 0.84[EUR][1000 genomes] |
| rs12430103 | 0.84[EUR][1000 genomes] |
| rs13378272 | 0.84[EUR][1000 genomes] |
| rs13379009 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1945514 | 0.91[EUR][1000 genomes] |
| rs3934709 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3935274 | 0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4488330 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56247479 | 0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7330643 | 0.92[EUR][1000 genomes] |
| rs7982521 | 0.85[EUR][1000 genomes] |
| rs7983715 | 0.84[EUR][1000 genomes] |
| rs7986250 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7989068 | 0.85[EUR][1000 genomes] |
| rs8001469 | 0.85[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9594306 | 0.90[EUR][1000 genomes] |
| rs9594314 | 0.81[EUR][1000 genomes] |
| rs9603467 | 0.92[EUR][1000 genomes] |
| rs9603469 | 0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9603474 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754118 | chr13:39347702-40222644 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
