Variant report
| Variant | rs7330643 |
|---|---|
| Chromosome Location | chr13:39487328-39487329 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000150893 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs11147741 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12184594 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12430103 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs13378272 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs13379009 | 0.96[EUR][1000 genomes] |
| rs1945514 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1945517 | 0.87[ASN][1000 genomes] |
| rs4488330 | 0.95[EUR][1000 genomes] |
| rs56247479 | 0.95[EUR][1000 genomes] |
| rs7982521 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7982923 | 0.82[EUR][1000 genomes] |
| rs7983069 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7983715 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7986250 | 0.96[EUR][1000 genomes] |
| rs7989068 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs9594306 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9603467 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9603469 | 0.92[EUR][1000 genomes] |
| rs9603474 | 0.96[EUR][1000 genomes] |
| rs9603480 | 0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2754118 | chr13:39347702-40222644 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:39485200-39489800 | Weak transcription | HMEC | breast |
