Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11147741	0.87[EUR][1000 genomes]
rs12184594	0.87[EUR][1000 genomes]
rs12430103	0.87[EUR][1000 genomes]
rs13378272	0.87[EUR][1000 genomes]
rs13379009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1945514	0.95[EUR][1000 genomes]
rs3934709	0.95[ASN][1000 genomes]
rs3935274	0.95[ASN][1000 genomes]
rs4488330	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56247479	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7330643	0.96[EUR][1000 genomes]
rs7982521	0.88[EUR][1000 genomes]
rs7983715	0.87[EUR][1000 genomes]
rs7989068	0.88[EUR][1000 genomes]
rs8001469	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9594306	0.93[EUR][1000 genomes]
rs9603467	0.96[EUR][1000 genomes]
rs9603469	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9603474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603480	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39490000-39495000	Weak transcription	HMEC	breast

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