Variant report

Variant	rs7982521
Chromosome Location	chr13:39481011-39481012
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39463216..39465859-chr13:39480202..39481912,2	MCF-7	breast:
2	chr13:39479950..39482154-chr13:39486542..39488534,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11147741	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11616774	0.83[EUR][1000 genomes]
rs11618539	0.83[EUR][1000 genomes]
rs12184594	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12430103	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13378272	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13379009	0.88[EUR][1000 genomes]
rs1945514	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4146172	0.83[EUR][1000 genomes]
rs4488330	0.87[EUR][1000 genomes]
rs56247479	0.87[EUR][1000 genomes]
rs61945502	0.83[EUR][1000 genomes]
rs61945504	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7330643	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7982923	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7983069	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7983715	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986250	0.88[EUR][1000 genomes]
rs7989068	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9594306	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9603467	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9603469	0.84[EUR][1000 genomes]
rs9603474	0.88[EUR][1000 genomes]
rs9603480	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39480400-39484600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr13:39480400-39486000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:39480600-39484600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr13:39480600-39484600	Weak transcription	HMEC	breast
5	chr13:39480600-39484600	Weak transcription	NHEK	skin

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