Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11147741	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12184594	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12430103	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13378272	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13379009	0.95[EUR][1000 genomes]
rs1945517	0.87[ASN][1000 genomes]
rs4488330	0.95[EUR][1000 genomes]
rs56247479	0.95[EUR][1000 genomes]
rs7330643	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7982521	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7982923	0.83[EUR][1000 genomes]
rs7983069	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7983715	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7986250	0.95[EUR][1000 genomes]
rs7989068	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9532308	0.93[JPT][hapmap]
rs9594306	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603467	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603469	0.91[EUR][1000 genomes]
rs9603474	0.95[EUR][1000 genomes]
rs9603480	0.91[EUR][1000 genomes]
rs9603481	0.83[CEU][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39480400-39484600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr13:39480400-39486000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:39480600-39484600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr13:39480600-39484600	Weak transcription	HMEC	breast
5	chr13:39480600-39484600	Weak transcription	NHEK	skin

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