Variant report

Variant	rs9532308
Chromosome Location	chr13:39512274-39512275
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13379009	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs3934709	0.98[ASN][1000 genomes]
rs3935274	0.98[ASN][1000 genomes]
rs4488330	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs56247479	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7986250	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs8001469	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9315635	0.82[EUR][1000 genomes]
rs9603469	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9603474	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9603480	0.89[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9603481	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1053818	chr13:39512274-39533011	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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