Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:39497714..39500454-chr13:39501817..39503959,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11147741	0.86[EUR][1000 genomes]
rs12184594	0.86[EUR][1000 genomes]
rs12430103	0.86[EUR][1000 genomes]
rs13378272	0.86[EUR][1000 genomes]
rs13379009	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1945514	0.95[EUR][1000 genomes]
rs3934709	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3935274	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56247479	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7330643	0.95[EUR][1000 genomes]
rs7982521	0.87[EUR][1000 genomes]
rs7983715	0.86[EUR][1000 genomes]
rs7986250	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7989068	0.87[EUR][1000 genomes]
rs8001469	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9532308	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9594306	0.93[EUR][1000 genomes]
rs9603467	0.95[EUR][1000 genomes]
rs9603469	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9603474	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9603480	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603481	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39500600-39503800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr13:39501200-39503800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr13:39503200-39504600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr13:39503400-39504200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:39503600-39504400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr13:39503600-39504400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr13:39503600-39504400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr13:39503600-39504600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr13:39503600-39504600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:39503600-39504600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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