Variant report

No.	Distal block	Cell Line	Cell type
1	chr13:39260706..39263308-chr13:39485054..39488048,3	MCF-7	breast:
2	chr13:39336793..39338874-chr13:39485836..39488751,2	MCF-7	breast:
3	chr13:39479950..39482154-chr13:39486542..39488534,2	K562	blood:

Variant related genes	Relation type
ENSG00000150893	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11147741	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12184594	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12430103	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13378272	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13379009	0.96[EUR][1000 genomes]
rs1945514	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1945517	0.87[ASN][1000 genomes]
rs4488330	0.95[EUR][1000 genomes]
rs56247479	0.95[EUR][1000 genomes]
rs7330643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7982521	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7982923	0.82[EUR][1000 genomes]
rs7983069	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7983715	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7986250	0.96[EUR][1000 genomes]
rs7989068	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9594306	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603469	0.92[EUR][1000 genomes]
rs9603474	0.96[EUR][1000 genomes]
rs9603480	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39485200-39489800	Weak transcription	HMEC	breast
2	chr13:39486400-39487200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:39487000-39487200	Enhancers	Small Intestine	intestine

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