Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11147741	0.83[EUR][1000 genomes]
rs12184594	0.83[EUR][1000 genomes]
rs12430103	0.83[EUR][1000 genomes]
rs13378272	0.83[EUR][1000 genomes]
rs13379009	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1945514	0.91[EUR][1000 genomes]
rs3934709	0.94[ASN][1000 genomes]
rs3935274	0.94[ASN][1000 genomes]
rs4488330	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56247479	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7330643	0.92[EUR][1000 genomes]
rs7982521	0.84[EUR][1000 genomes]
rs7983715	0.83[EUR][1000 genomes]
rs7986250	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7989068	0.84[EUR][1000 genomes]
rs8001469	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9594306	0.90[EUR][1000 genomes]
rs9603467	0.92[EUR][1000 genomes]
rs9603474	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9603480	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39490000-39495000	Weak transcription	HMEC	breast

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