Variant report

Variant	rs3934709
Chromosome Location	chr13:39517295-39517296
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11619578	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13379009	0.95[ASN][1000 genomes]
rs3935274	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3935275	0.83[EUR][1000 genomes]
rs4488330	0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56247479	0.94[ASN][1000 genomes]
rs7986250	0.95[ASN][1000 genomes]
rs8001469	0.94[ASN][1000 genomes]
rs9532308	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs9594314	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9603469	0.94[ASN][1000 genomes]
rs9603474	0.95[ASN][1000 genomes]
rs9603480	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9603481	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1053818	chr13:39512274-39533011	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39514800-39524200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links