Variant report

Variant	rs8001469
Chromosome Location	chr13:39492616-39492617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13379009	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3934709	0.94[ASN][1000 genomes]
rs3935274	0.94[ASN][1000 genomes]
rs4488330	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4564450	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56247479	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7986250	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9532308	1.00[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.93[JPT][hapmap];0.98[LWK][hapmap];0.83[MEX][hapmap];0.96[MKK][hapmap];0.81[TSI][hapmap];0.95[YRI][hapmap]
rs9603469	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9603474	0.91[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs9603480	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9603481	0.95[CHB][hapmap];0.92[JPT][hapmap];0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39490000-39495000	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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