Variant report

Variant	rs11620414
Chromosome Location	chr13:85224792-85224793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11619718	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12877791	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59883236	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61960216	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61960218	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73534421	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9565948	0.83[EUR][1000 genomes]
rs9565949	0.87[EUR][1000 genomes]
rs9565950	0.87[EUR][1000 genomes]
rs9565952	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9565958	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9565960	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9565961	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9575611	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9575619	0.87[EUR][1000 genomes]
rs9575620	0.86[EUR][1000 genomes]
rs9575622	0.87[EUR][1000 genomes]
rs9575624	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9575626	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9575627	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9575628	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9575629	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9575630	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9575640	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9575642	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9575646	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv456046	chr13:84971270-85262508	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv562561	chr13:84971270-85262508	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv900691	chr13:85206473-85294881	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1851778	chr13:85206473-85299207	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv900692	chr13:85218788-85294881	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85219200-85225200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr13:85219800-85227600	Weak transcription	Right Ventricle	heart
3	chr13:85219800-85229800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:85220000-85225400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:85220200-85225600	Weak transcription	Left Ventricle	heart
6	chr13:85220400-85228200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr13:85221400-85227800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr13:85223400-85226000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:85223600-85225200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr13:85223600-85228600	Enhancers	Fetal Heart	heart
11	chr13:85223600-85229400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr13:85224000-85225200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr13:85224000-85225200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr13:85224000-85226000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr13:85224200-85225200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr13:85224400-85224800	Weak transcription	Osteobl	bone
17	chr13:85224400-85225400	Weak transcription	NH-A	brain
18	chr13:85224600-85225000	Weak transcription	HMEC	breast
19	chr13:85224600-85225400	Weak transcription	Hela-S3	cervix

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