Variant report
| Variant | rs9565949 |
|---|---|
| Chromosome Location | chr13:85204881-85204882 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs11619718 | 0.86[EUR][1000 genomes] |
| rs11620279 | 0.85[ASN][1000 genomes] |
| rs11620414 | 0.87[EUR][1000 genomes] |
| rs12877791 | 0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1446788 | 1.00[ASN][1000 genomes] |
| rs17324041 | 0.85[ASN][1000 genomes] |
| rs41290720 | 0.81[ASN][1000 genomes] |
| rs59883236 | 0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs59952832 | 0.81[ASN][1000 genomes] |
| rs60660216 | 0.81[ASN][1000 genomes] |
| rs7324093 | 0.81[ASN][1000 genomes] |
| rs73532263 | 0.84[AFR][1000 genomes] |
| rs7993320 | 1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs9565948 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9565950 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9565952 | 0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9565958 | 0.88[EUR][1000 genomes] |
| rs9575603 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9575611 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9575619 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9575620 | 0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9575622 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9575624 | 0.94[EUR][1000 genomes] |
| rs9575626 | 0.88[EUR][1000 genomes] |
| rs9575627 | 0.88[EUR][1000 genomes] |
| rs9575628 | 0.88[EUR][1000 genomes] |
| rs9575629 | 0.88[EUR][1000 genomes] |
| rs9575630 | 0.88[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949402 | chr13:84675752-85606846 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv456046 | chr13:84971270-85262508 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv562561 | chr13:84971270-85262508 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:85200200-85211400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
